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ncbi non redundant protein sequences database nr  (Biotechnology Information)

 
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    Biotechnology Information ncbi non redundant protein sequences database nr
    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
    Ncbi Non Redundant Protein Sequences Database Nr, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ncbi+non+redundant+protein+sequence+nr+database/database+ncbi+non+redundant/bio_rxiv__64898__2026__01__27__701970-128-6-4
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    1) Product Images from "An enzyme-level benchmark based on environmental bacterial laccases for predicting contaminant fate in water"

    Article Title: An enzyme-level benchmark based on environmental bacterial laccases for predicting contaminant fate in water

    Journal: bioRxiv

    doi: 10.64898/2026.01.27.701970

    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
    Figure Legend Snippet: (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.

    Techniques Used: Environmental Sampling

    Related Articles

    Comparison:

    Article Title: Tide-driven biogeochemical gradient shapes the vertical profile of dark carbon fixation in intertidal wetlands
    Article Snippet: .. The representative sequences were ultimately classified into taxonomy through a comparison with the National Center for Biotechnology Information (NCBI) Non-Redundant Protein Sequence (NR) database. ..

    Sequencing:

    Article Title: Tide-driven biogeochemical gradient shapes the vertical profile of dark carbon fixation in intertidal wetlands
    Article Snippet: .. The representative sequences were ultimately classified into taxonomy through a comparison with the National Center for Biotechnology Information (NCBI) Non-Redundant Protein Sequence (NR) database. ..



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    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
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    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
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    Image Search Results


    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.

    Journal: bioRxiv

    Article Title: An enzyme-level benchmark based on environmental bacterial laccases for predicting contaminant fate in water

    doi: 10.64898/2026.01.27.701970

    Figure Lengend Snippet: (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.

    Article Snippet: The National Center for Biotechnology Information (NCBI) non-redundant protein sequences database (nr) was queried using BLASTP with the above-listed stringent homology parameters, resulting in 960 unique protein sequences.

    Techniques: Environmental Sampling